Environmental Chemistry

Students enrolled in CH-242 will become familiar with the fundamental concepts and nomenclature needed to understand and communicate organic chemistry. The course is furtherdesigned to teach the structure-function relationships that exist across many classes of organic and bio-organic systems, and therefore provide a foundation for further study in chemistry, biochemistry, biology, and medicine.

3 CreditsNPrerequisite: CH-144; Corequisite: CH-233.

This course will utilize techniques learned in CH-145 and carry out experiments illustrative of concepts learned in CH-232. The course will focus on spectroscopy, organic laboratory techniques and reactions, and compound characterization. This course will also reinforce good record-keeping skills continue to stress safe lab practices. A lab fee is associated with this course.

1 CreditsNPrerequisite: CH-145. Corequisite: CH-232.

Exploration of experimental techniques and topics that are pertinent to the careful analytical evaluation of biologically relevant chemistry.

1 CreditN, QSPrerequisites: Take BI-101 (or have instructor's permission) and CH-232. Note: A special lab fee is assessed.

This course focuses on the methods that chemists use to identify and quantify compounds of interest and measure their physical properties. Classroom and laboratory time will be spent considering experimental design, measurement techniques, and validation of results in a variety of chemical contexts.

4 CreditsN, QSPrerequisites: CH-144 and CH-145. Note: A special lab fee is assessed.

The fourth semester of the introductory Chemistry series, this course pulls content from chemistry, biology, mathematics, and history to provide an integrated view of biochemistry. Topics include the use of thermodynamics, equilibrium, non-covalent interactions, kinetics, separations, biomolecular structure, and genetics to probe and explain biological phenomenon.

3 CreditsNPrerequisites: Take BI-102 (or have instructor's permission) and CH-232.

In this course students will investigate the physical characteristics and interactions of matter. Topics covered will include thermodynamics, kinetics, quantum mechanics, and molecular spectroscopy within the contexts of chemistry and biochemistry. In addition, molecular modeling techniques will be briefly introduced.

3 CreditsNPrerequisites: Take CH-144, MA-130, and either PC-200 or PC-202.

In this course, students will gain hands-on practice at obtaining data pertinent to physical chemistry through laboratory experiments. Experiments will be performed that highlight material from Physical Chemistry I (CH-352). A significant component of each lab will involve molecular modeling.

1 CreditN, Q, CWCorequisite: CH-352.

The objective of this course is to provide an overview of surface and groundwater quality and the impacts of human and natural influences on both human and environmental health. Analytical methods for water quality assessment. Physical, chemical, and biological factors of water quality. Introduction to water/wastewater treatment processes.

4 CreditsNPrereqs: CH-142 and BI-101.

A study of the physical, chemical, and biological aspects of streams, rivers, ponds, and lakes. Emphasis on the role of water chemistry, pollution, and biotic interactions on the distribution of aquatic life. Laboratory includes field sampling and identification of aquatic organisms.

4 CreditsN

An ecology/environmental science course covering inland aquatic environments (lakes and streams). A balanced study of both physical-chemical and biological aspects, it is an appropriate upper level addition to a variety of POE's in natural sciences.

4 CreditsNTake BI105 and BI121 and ESS100 or permission of the instructor.

Theory and design of water and waste treatment systems for industrial, municipal, and hazardous pollutants and natural biotransformation of pollutants in the environment. Laboratory experience in startup, operation, and analysis of systems that biodegrade pollutants and produce useful forms of energy.

4 Credits

This course is an introduction to a Geographical Information System (GIS), and the course objective is that students gain a basic, partial understanding of GIS concepts, technical issues, andapplications using Arc View GIS. It encourages thinking in spatial context. A diverse array of hands-on computer applicationsand projects are used to understand how geographical data can be analyzed spatially. Students explore analysis techniques in a problem basis learning approach using small team projects.

4 CreditsCTGISNote: A special course fee is assessed. Prerequisite: ESS100.

This is an advanced hydrology course aimed at furthering the students understanding of the complex interactions of the hydrologic cycle. Particular emphasis will be placed on mathematically modeling the process including precipitation, runoff, infiltration, soil moisture and stream flow.

3 CreditsQS, N, CTGISPrerequisites: ESS310 and MA130

This course is a survey of the elements of fisheries science and management including the biology, ecology, management, and conservation of fisheries and aquatic resources. Emphasis is on whole ecosystem approaches to ecology and management of inland freshwater fisheries of North America and associated habitats. 

4 CreditsH, N, QSPrerequisite: BI-101 or BI-105

General Biology I is the first course in the Biology POE core curriculum. This course will be structured around four primary case studies on the opioid crisis, climate change, environmental toxicology and the evolution of speed in animals. The cases will outline foundational concepts in molecular biology and evolution.

4 Credits

General Biology II is the second course in the Biology POE core curriculum. In the first four weeks of this course, each lab section will work through basic lab skill development. After that, students will deploy those skills to answer a specific open-ended research question that is part of their instructor's area of expertise.

4 CreditsPrerequisite: BI-101 or BI-105

Examines the interactions of living organisms with their physical, chemical and biotic environments. Special attention is given to the environmental, biological and historical factors affecting the distribution, abundance, adaptation, and diversity of species in natural communities.

3 CreditsNPrerequisites: BI-101 and BI-102. Corequisite: BI-301.

Students work together as research teams to carry out original investigations on the ecology of local species and natural communities. Emphasis on ecological research design, data collection and analysis, and oral and written presentation of results. Frequent field trips are included. Note: a special lab fee is assessed and one field trip may require an additional fee.

1 CreditsNCorequisite: BI300

Broadly integrative in nature, this class compounds in environmental systems and focuses on the potential for deleterious consequences in wildlife species and humans. Examines aspects of chemistry, cell biology and ecology in considering environmental contamination. Instruction includes lectures and student presentations/writing exercises.

3 CreditsNPrerequisites: Take 2 courses from BI105 or CH142 or ESS100 and permission of the instructor.

The primary tools that chemists use to characterize chemical species involve increasingly complex instrumentation. We will explore the principles and methodology of various types of instrumental methods and will analyze data resulting from these techniques.

3 CreditsNPrerequisites: CH-232. Note: A special lab fee is assessed.

Advanced specialized topics in chemistry and related areas. Topic titles may vary from semester to semester. Note: abbreviated ST: (title); students may take more than one " ST: " course for credit.

1-4 Credits Offered at the discretion of the department to qualified students.

A continuation of the study of organic chemistry begun in CH-232 and CH-233. Special emphasis is placed on advanced aspects of structure and reactivity, with careful attention to the methodology and tools of synthesis. Topics include aromatic chemistry, enolate chemistry, pericyclic reactions, retrosynthetic analysis and various aspects of stereoselectivity.

4 CreditsNPrerequisites: CH-232 and CH-233.

In this course students will advance their understanding of physical chemistry concepts through primary literature sources and discussion. The course will focus on literature from the beginnings of thermodynamics and quantum mechanics as well as more modern research.

3 CreditsNPrerequisites: Take CH-352, MA-230, and either PC-201 or PC-203.

Completes an introductory study of inorganic chemistry at an undergraduate level. Theoretical topics, like electronic structure (molecular orbital theory), molecular symmetry, theories about complexes, reaction mechanisms of complexes, catalysis, introduction to solid state chemistry, and a role of metals in life processes are covered. Students will become familiar with inorganic chemistry journals, SciFinder and the Cambridge Structural Database.

3 CreditsNPrerequisites: CH-222 and CH-352.

Advanced Biochemistry is the third semester of the Biochemistry and Molecular Biology (BMB) curriculum for Biochemistry POEs, expanding the content of the previous two semesters. Stressing techniques and instrumentation, the course is comprised of student-led learning modules, which are created around the primary literature with the help of the instructor. Topics may include metabolism, systems biology, or genomics.

3 CreditsNPrerequisite CH342.

Individual research projects directed by faculty members

1-4 CreditsNPrerequisite: Permission of the instructor.

This course explores spatial decision support systems, hot spot modeling for home range, disease and crime, intermediate image analysis, habitat classification from multispectral and hyperspectral imagery.

4 CreditsN, QSPrerequisites: ESS310 or ESS330 or permission of the instructor.

An independent research experience that includes the preparation of a research proposal. Students present research results during weekly meetings with instructor. A research paper is the end point of the research experience. Presentation of results at national meetings is encouraged. May be repeated for up to 15 credits.

1-6 CreditsSPrerequisite: ESS100 and permission of the instructor.

This course explores the building blocks of the Earth: minerals. Students will master mineral identification in hand-specimen and by optical microscope methods to conduct scientific inquiry. Emphasis is placed on mineral classification, crystal structure, chemical composition, physical properties, and stability. We also investigate the role of minerals in society and public policy. A lab fee is assessed.

4 CreditsN, WK-SPPre-req: FYC-101 or EN-110 or EN-109.

The study of the natural occurrence of water. Topics include: the hydrologic cycle, precipitation, stream flow, soil moisture, ground water occurrence, aquifer flow and testing chemical characteristics, contamination, development and management of ground-water resources. Note: Includes a field experience and a special fee is assessed.

3 CreditsN 

This course is the capstone experience of the chemistry and biochemistry programs of emphasis. In this course, students will reflect on the totality of their chemistry or biochemistry education and relate it to their broaderJuniata education. This course will develop and emphasize students' roles as active and empowered members of the scientific community.

1 CreditRequires senior standing.